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Tutorial: Cellpose Integration#

This tutorial demonstrates how to use Cellpose models within the OMERO Annotate AI framework for cell segmentation workflows.

Overview#

Cellpose is a powerful deep learning model for cell segmentation. This tutorial covers:

  • Setting up Cellpose models in the annotation pipeline
  • Configuring cell-specific segmentation parameters
  • Comparing Cellpose vs micro-SAM results
  • Best practices for different cell types

Prerequisites#

  • OMERO Annotate AI with Cellpose support installed
  • Cell imaging data in OMERO
  • Understanding of basic annotation workflows

Coming Soon#

This tutorial is under development. Cellpose integration provides powerful cell segmentation capabilities within the OMERO annotation pipeline.