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Tutorials#

Learn OMERO Annotate AI through step-by-step tutorials covering all major workflows.

🎯 Tutorial Overview#

Our tutorials are designed to take you from beginner to advanced user:

🚀 Essential Tutorials#

micro-SAM Annotation Pipeline

Complete

Master the core annotation workflow using micro-SAM for automated segmentation.

You'll learn:

  • OMERO server connection
  • Configuration setup
  • Pipeline execution
  • Result analysis

Start Tutorial

🔬 Specialized Workflows#

Cellpose Integration

Coming Soon

Use Cellpose models for specialized cell segmentation tasks.

View Tutorial

Training Data Preparation

Coming Soon

Convert OMERO annotations into high-quality training datasets.

View Tutorial

🧠 Advanced Training#

BiaPy Integration

Coming Soon

Train custom deep learning models using BiaPy framework.

View Tutorial

📖 Learning Path#

Recommended Learning Path

  1. Start here: micro-SAM Annotation Pipeline
  2. Configure workflows: Configuration Guide
  3. Explore specialized workflows: Choose tutorials based on your needs

🔗 Additional Resources#

💡 Tutorial Format#

Each tutorial includes:

  • Prerequisites - What you need before starting
  • Step-by-step instructions - Clear, actionable guidance
  • Code examples - Copy-paste ready snippets
  • Troubleshooting - Common issues and solutions
  • Next steps - Where to go after completing the tutorial

🤝 Contributing#

Found an issue or want to suggest improvements?

Happy learning! 🎉