QuPath

Installation

You can find the latest version of QuPath here: qupath.github.io . For more details check the documentation.

Usage

QuPath has a intuitive user interface to work with large (2D) images. QuPath has a very clear documentation with for example tutorials on different applications.

Extensions

QuPath also allows to install extensions. For example to use AI models for segmentation:
- InstanSeg
- Stardist
- Cellpose

Another useful extension is the OMERO extension. This extension allows to load images from OMERO into your QuPath project . Find more details here .