CellProfiler

Getting started with CellProfiler: Tutorials

Installation

You can get the lastest version of CellProfiler here . Be aware that in some cases pipelines will only work with a specific version of CellProfiler so you can download specific versions here.

CellProfiler with AI tools included:

Getting CellProfiler to work with AI tools for segmentation can be challenging. This an adjusted release of CellProfiler v4.2.8 with Stardist and Cellpose included. When you install this version on your computer it should work with these tools without the need of installing them separately.

You can find the installer files on Github